plotTree: Tree visualization

In ndukler/epiAllele: Tests for signals of variable rates of evolution between gene classes and lineages for probabalistic alleles

Description

Plots tree with various helpful highlightings

Arguments

obj	alleleData
colorByRate	Can be set to either color by the grouping of rates or their actual values. Only usable with rateModel object.
scaleBranches	If TRUE, branches are scaled by rate (default = FALSE)
offset	How much to offset tip labels by
xmax	Maximum value of x axis in tree plots (Note: if you want different x axis for different tree plots use xlim_expand on the returned object)
nodeLabels	if TRUE label nodes with numbers
nodeLabels	if TRUE label tips with names

ndukler/epiAllele documentation built on May 5, 2019, 4:50 p.m.