plotTree: Tree visualization

Description Arguments

Description

Plots tree with various helpful highlightings

Arguments

obj

alleleData

colorByRate

Can be set to either color by the grouping of rates or their actual values. Only usable with rateModel object.

scaleBranches

If TRUE, branches are scaled by rate (default = FALSE)

offset

How much to offset tip labels by

xmax

Maximum value of x axis in tree plots (Note: if you want different x axis for different tree plots use xlim_expand on the returned object)

nodeLabels

if TRUE label nodes with numbers

nodeLabels

if TRUE label tips with names


ndukler/epiAllele documentation built on May 5, 2019, 4:50 p.m.