Man pages for ndukler/tkSim
Simulates transcript abundance based on synthesis and degredation rates
| basicKineticModel | Basic Kinetic Model Constructor |
| basicKineticModel-class | Class basicKineticModel |
| calculateEquilibrium | Calculate equilibrium transcript abundance |
| calculatePosteriors | Calculate Posterior Probabilities for Infered Parameters |
| estimateDispersions | Estimate Dispersions Using DESeq2 |
| hello | Hello, World! |
| inferParameters | Infer Parameters from Read Data |
| plotAbundances | Plot transcript abundance |
| plotMarginalDist | Plot the marginal posterior distribution of an estimated... |
| plotParameterFit | Plot Data Against the Fit Parameters |
| plotPosteriors | Plot Posteriors for Infered Parameters |
| simulateData | Simulate Theoretical Data |
| simulateReads | Simulate Reads |
| timeEpsilonEq | Calculate time to near equilibrium |
