plotParameterFit: Plot Data Against the Fit Parameters

In ndukler/tkSim: Simulates transcript abundance based on synthesis and degredation rates

Description

Plot the curve defined by the estimated parameters against the raw data for a selected set of genes

Usage

## S4 method for signature 'basicKineticModel'
plotParameterFit(object, geneIdx = NULL,
  legend = F, scaleData = T, plotTimes = NULL)

Arguments

object	A basicKineticModel object
geneIdx	The row index from @data of the gene to plot. May be defined as an integer for one gene or a vector for multiple genes.
legend	Boolean controlling if the plot should contain a legend.
scaleData	If true, will scale the data by a given genes's corresponding normalization factors. If false, will scale the fit function by the average normalization factor across replicates for each time point.
plotTimes	A vector of times specifying the times over which to plot the data and parameter curve. All time points in object@data that are also in plotTimes will be plotted. Time points only in plotTimes will be ignored. If NULL the times specified by object@times will be used.

ndukler/tkSim documentation built on May 16, 2019, 8:12 p.m.