Description Usage Arguments Value Note Examples
This function calls fslmaths -mas
to mask an image from
an image mask and either saves the image or returns an object of class nifti
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... |
additional arguments passed to |
outfile |
(character) resultant masked image name |
retimg |
(logical) return image of class nifti |
file |
(character) image to be masked |
mask |
(character) mask given for image |
reorient |
(logical) If retimg, should file be reoriented when read in?
Passed to |
intern |
(logical) to be passed to |
opts |
(character) additional options to be passed to fslmask |
verbose |
(logical) print out command before running |
Result from system command, depends if intern is TRUE or FALSE.
Functions with underscores have different defaults and will return an output filename, so to be used for piping
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