n4_skull_strip: Skull Strip image

Description Usage Arguments Value

View source: R/n4_skull_strip.R

Description

Skull Strip image

Usage

1
2
3
4
5
6
7
n4_skull_strip(file, template = system.file("extdata", "pennTemplate",
  "template.nii.gz", package = "LINDA"),
  template_brain = system.file("extdata", "pennTemplate",
  "templateBrain.nii.gz", package = "LINDA"),
  template_mask = system.file("extdata", "pennTemplate",
  "templateBrainMask.nii.gz", package = "LINDA"), verbose = TRUE,
  n_iter = 2)

Arguments

file

Filename of T1 image

template

Template full image

template_brain

Template brain image

template_mask

Template brain mask

verbose

print diagnostic messages

n_iter

Number of iterations undergone with abpN4 and abpBrainExtraction

Value

A list of output images, brain and corrected


neuroconductor/LINDA documentation built on Jan. 17, 2019, 10:07 a.m.