Description Usage Arguments Value
View source: R/linda_predict_function.R
Run Lesion Prediction from LINDA
1 2 3 4 5 6 | linda_predict(file = NA, brain_mask = NULL, n_skull_iter = 2,
verbose = TRUE, outdir = NULL, voxel_resampling = c(2, 2, 2),
sigma = 2, reflaxis = 0,
saveMNI = file.exists(system.file("extdata", "pennTemplate",
"templateToCh2_0GenericAffine.mat", package = "LINDA", mustWork =
FALSE)), cache = TRUE)
|
file |
Filename of T1 image |
brain_mask |
A filename or |
n_skull_iter |
Number of skull stripping iterations |
verbose |
Print diagnostic messages |
outdir |
Output directory |
voxel_resampling |
Resampling resolution of voxesl |
sigma |
Smoothing factor, passed to
|
reflaxis |
Reflection axis |
saveMNI |
(logical) whether to save outputs in MNI space
If transformation files are available, |
cache |
(default=TRUE) use existing processed files to speed up processing. Useful for interrupted processes. Will re-process and overwrite if set to FALSE |
A list of things
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