Description Usage Arguments Value
View source: R/reg_whitestripe.R
This function performs registration to a T1 template using ANTsR and SyN transformation
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 | reg_whitestripe(
t1 = NULL,
t2 = NULL,
register = TRUE,
native = TRUE,
template.file = file.path(fsldir(), "data", "standard", paste0("MNI152_T1_1mm",
ifelse(is.null(mask), "", "_brain"), ".nii.gz")),
typeofTransform = c("Rigid", "Affine"),
interpolator = "LanczosWindowedSinc",
type = c("T1", "T2", "hybrid"),
t1.outfile = NULL,
t2.outfile = NULL,
other.files = NULL,
other.outfiles = NULL,
ws.outfile = NULL,
mask = NULL,
mask.outfile = NULL,
verbose = TRUE,
reproducible = TRUE,
seed = 1,
...
)
|
t1 |
filename (or nifti objects) of T1 image |
t2 |
filename (or nifti objects) of T2 image |
register |
Register image to template file |
native |
If images are registered, should the native space normalized image be returned? |
template.file |
Filename of template to warp to |
typeofTransform |
type of transformed used, passed to
|
interpolator |
Interpolation to be performed, passed to
|
type |
Type of whitestripe normalization done |
t1.outfile |
Output filename of normalized T1 image |
t2.outfile |
Output filename of normalized T2 image |
other.files |
Character filenames or list of nifti objects to normalize. In the same space as T1. |
other.outfiles |
Character filenames for output normalized files. |
ws.outfile |
Character filename for output whitestripe mask. |
mask |
File or nifti image of brain mask |
mask.outfile |
Character filename for output brain mask. |
verbose |
Print Diagnostic Messages |
reproducible |
Sets the seed and
|
seed |
will execute
|
... |
arguments to |
List of nifti objects or character filenames
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