rats: Robust Alignment to a Target Spectrum (RATS).

In neuroconductor/spant: MR Spectroscopy Analysis Tools

Description

Robust Alignment to a Target Spectrum (RATS).

Usage

rats(
  mrs_data,
  ref = NULL,
  xlim = c(4, 0.5),
  max_shift = 20,
  p_deg = 2,
  sp_N = 2,
  sp_deg = 3,
  max_t = 0.2,
  basis_type = "poly"
)

Arguments

mrs_data	MRS data to be corrected.
ref	optional MRS data to use as a reference, the mean of all dynamics is used if this argument is not supplied.
xlim	optional frequency range to perform optimisation, set to NULL to use the full range.
max_shift	maximum allowable frequency shift in Hz.
p_deg	polynomial degree used for baseline modelling. Negative values disable baseline modelling.
sp_N	number of spline functions, note the true number will be sp_N + sp_deg.
sp_deg	degree of spline functions.
max_t	truncate the FID when longer than max_t to reduce time taken
basis_type	may be one of "poly" or "spline".

Value

a list containing the corrected data; phase and shift values in units of degrees and Hz respectively.

neuroconductor/spant documentation built on May 25, 2021, 1:49 a.m.