Files in neuroconductor/spant
MR Spectroscopy Analysis Tools

.Rbuildignore
.gitattributes
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS.md R/amp_scaling.R R/basis_set.R R/data.R R/fit_display.R R/fitting.R R/fp_corr_td.R R/image_reg.R R/interactive_plotting.R R/mol_parameters.R R/mrs_data_display.R R/mrs_data_io.R R/mrs_data_proc.R R/mrs_read_ima.R R/mrs_read_list_data.R R/mrs_read_paravis.R R/mrs_read_pfile.R R/mrs_read_rda.R R/mrs_read_spar_sdat.R R/mrs_read_twix.R R/pulse_sequences.R R/pulse_shapes.R R/qm_simulation.R R/rats.R R/spant.R R/utils.R R/varpro.R R/varpro_3_para.R
README-basis_sim-1.png
README-fitting-1.png
README-import-1.png
README-processing-1.png
README.Rmd README.md
_pkgdown.yml
appveyor.yml
cran-comments.md
data/spant_mpress_drift.rda
docs/README-basis_sim-1.png
docs/README-fitting-1.png
docs/README-import-1.png
docs/README-processing-1.png
docs/articles/index.html
docs/articles/spant-intro.html
docs/articles/spant-intro_files/figure-html/basis_sim-1.png
docs/articles/spant-intro_files/figure-html/fitting-1.png
docs/articles/spant-intro_files/figure-html/processing-1.png
docs/articles/spant-intro_files/figure-html/useage-1.png
docs/authors.html
docs/index.html
docs/jquery.sticky-kit.min.js
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/N.html
docs/reference/Nspec.html
docs/reference/acquire.html
docs/reference/align.html
docs/reference/apodise_xy.html
docs/reference/append_dyns.html
docs/reference/apply_axes.html
docs/reference/apply_mrs.html
docs/reference/apply_pvc.html
docs/reference/basis2mrs_data.html
docs/reference/beta2lw.html
docs/reference/calc_coil_noise_cor.html
docs/reference/calc_coil_noise_sd.html
docs/reference/calc_peak_info.html
docs/reference/calc_sd_poly.html
docs/reference/calc_spec_diff.html
docs/reference/calc_spec_snr.html
docs/reference/check_lcm.html
docs/reference/check_tqn.html
docs/reference/comb_coils.html
docs/reference/comb_csv_results.html
docs/reference/comb_metab_ref.html
docs/reference/conj.html
docs/reference/crop_spec.html
docs/reference/def_N.html
docs/reference/def_acq_paras.html
docs/reference/def_fs.html
docs/reference/def_ft.html
docs/reference/def_ref.html
docs/reference/dyns.html
docs/reference/ecc.html
docs/reference/est_noise_sd.html
docs/reference/fd2td.html
docs/reference/fit_diags.html
docs/reference/fit_mrs.html
docs/reference/fit_tab2csv.html
docs/reference/fp_corr_td.html
docs/reference/fp_phase.html
docs/reference/fp_phase_correct.html
docs/reference/fs.html
docs/reference/ft_shift.html
docs/reference/ft_shift_mat.html
docs/reference/gen_F.html
docs/reference/gen_F_xy.html
docs/reference/get_1h_brain_basis_paras.html
docs/reference/get_1h_brain_basis_paras_v1.html
docs/reference/get_acq_paras.html
docs/reference/get_dyns.html
docs/reference/get_even_dyns.html
docs/reference/get_fh_dyns.html
docs/reference/get_fit_map.html
docs/reference/get_fp.html
docs/reference/get_guassian_pulse.html
docs/reference/get_metab.html
docs/reference/get_mol_names.html
docs/reference/get_mol_paras.html
docs/reference/get_odd_dyns.html
docs/reference/get_ref.html
docs/reference/get_seg_ind.html
docs/reference/get_sh_dyns.html
docs/reference/get_slice.html
docs/reference/get_svs_voi.html
docs/reference/get_td_amp.html
docs/reference/get_uncoupled_mol.html
docs/reference/get_voi_seg.html
docs/reference/get_voxel.html
docs/reference/hsvd_filt.html
docs/reference/ift_shift.html
docs/reference/image.mrs_data.html
docs/reference/index.html
docs/reference/int_spec.html
docs/reference/interleave_dyns.html
docs/reference/inv_even_dyns.html
docs/reference/inv_odd_dyns.html
docs/reference/is_fd.html
docs/reference/lb.html
docs/reference/lw2beta.html
docs/reference/mat2mrs_data.html
docs/reference/mean_dyn_blocks.html
docs/reference/mean_dyn_pairs.html
docs/reference/mean_dyns.html
docs/reference/median_dyns.html
docs/reference/mrs_data2basis.html
docs/reference/mrs_data2mat.html
docs/reference/mvfftshift.html
docs/reference/n2coord.html
docs/reference/peak_info.html
docs/reference/phase.html
docs/reference/plot.fit_result.html
docs/reference/plot.mrs_data.html
docs/reference/plot_fit_slice.html
docs/reference/plot_fit_slice_inter.html
docs/reference/plot_slice_map.html
docs/reference/plot_slice_map_inter.html
docs/reference/plot_voi_overlay.html
docs/reference/plot_voi_overlay_seg.html
docs/reference/ppm.html
docs/reference/print.fit_result.html
docs/reference/print.mrs_data.html
docs/reference/qn_states.html
docs/reference/read_basis.html
docs/reference/read_lcm_coord.html
docs/reference/read_mrs.html
docs/reference/read_mrs_dpt.html
docs/reference/read_mrs_tqn.html
docs/reference/read_tqn_fit.html
docs/reference/read_tqn_result.html
docs/reference/rep_array_dim.html
docs/reference/rep_dyn.html
docs/reference/rep_mrs.html
docs/reference/resample_voi.html
docs/reference/rm_dyns.html
docs/reference/scale_amp_molal_pvc.html
docs/reference/scale_amp_molar.html
docs/reference/scale_amp_ratio.html
docs/reference/scale_amp_water_ratio.html
docs/reference/seconds.html
docs/reference/seq_cpmg_ideal.html
docs/reference/seq_mega_press_ideal.html
docs/reference/seq_press_fast.html
docs/reference/seq_press_ideal.html
docs/reference/seq_pulse_acquire.html
docs/reference/seq_pulse_acquire_31p.html
docs/reference/seq_spin_echo_ideal.html
docs/reference/seq_spin_echo_ideal_31p.html
docs/reference/seq_steam_ideal.html
docs/reference/set_def_acq_paras.html
docs/reference/set_lcm_cmd.html
docs/reference/set_ref.html
docs/reference/set_td_pts.html
docs/reference/set_tqn_cmd.html
docs/reference/shift.html
docs/reference/sim_basis.html
docs/reference/sim_basis_1h_brain_press.html
docs/reference/sim_basis_tqn.html
docs/reference/sim_brain_1h.html
docs/reference/sim_mol.html
docs/reference/sim_noise.html
docs/reference/sim_resonances.html
docs/reference/spant-package.html
docs/reference/spant_mpress_drift.html
docs/reference/spin_sys.html
docs/reference/spm_pve2categorical.html
docs/reference/stackplot.fit_result.html
docs/reference/stackplot.html
docs/reference/stackplot.mrs_data.html
docs/reference/sum_coils.html
docs/reference/sum_dyns.html
docs/reference/td2fd.html
docs/reference/td_conv_filt.html
docs/reference/varpro_3_para_opts.html
docs/reference/varpro_opts.html
docs/reference/vec2mrs_data.html
docs/reference/write_basis.html
docs/reference/write_basis_tqn.html
docs/reference/write_mrs_dpt_v2.html
docs/reference/zero_nzoc.html
docs/reference/zf.html
docs/reference/zf_xy.html
docs/sitemap.xml
index.Rmd inst/doc/spant-intro.R inst/doc/spant-intro.Rmd
inst/doc/spant-intro.html
inst/extdata/philips_spar_sdat_WS.SDAT
inst/extdata/philips_spar_sdat_WS.SPAR
inst/reports/mpress_gaba.Rmd man/N.Rd man/Nspec.Rd man/acquire.Rd man/align.Rd man/apodise_xy.Rd man/append_dyns.Rd man/apply_axes.Rd man/apply_mrs.Rd man/apply_pvc.Rd man/basis2mrs_data.Rd man/beta2lw.Rd man/calc_coil_noise_cor.Rd man/calc_coil_noise_sd.Rd man/calc_sd_poly.Rd man/calc_spec_diff.Rd man/calc_spec_snr.Rd man/check_lcm.Rd man/check_tqn.Rd man/comb_coils.Rd man/comb_csv_results.Rd man/comb_metab_ref.Rd man/conj.Rd man/crop_spec.Rd man/def_N.Rd man/def_acq_paras.Rd man/def_fs.Rd man/def_ft.Rd man/def_ref.Rd man/dyns.Rd man/ecc.Rd man/est_noise_sd.Rd man/fd2td.Rd man/fit_diags.Rd man/fit_mrs.Rd man/fit_tab2csv.Rd man/fp_phase.Rd man/fp_phase_correct.Rd man/fs.Rd man/ft_shift.Rd man/ft_shift_mat.Rd man/gen_F.Rd man/gen_F_xy.Rd man/get_1h_brain_basis_paras.Rd man/get_1h_brain_basis_paras_v1.Rd man/get_acq_paras.Rd man/get_dyns.Rd man/get_even_dyns.Rd man/get_fh_dyns.Rd man/get_fit_map.Rd man/get_fp.Rd man/get_guassian_pulse.Rd man/get_metab.Rd man/get_mol_names.Rd man/get_mol_paras.Rd man/get_odd_dyns.Rd man/get_ref.Rd man/get_seg_ind.Rd man/get_sh_dyns.Rd man/get_slice.Rd man/get_svs_voi.Rd man/get_td_amp.Rd man/get_uncoupled_mol.Rd man/get_voi_seg.Rd man/get_voxel.Rd man/hsvd_filt.Rd man/ift_shift.Rd man/image.mrs_data.Rd man/int_spec.Rd man/interleave_dyns.Rd man/inv_even_dyns.Rd man/inv_odd_dyns.Rd man/is_fd.Rd man/lb.Rd man/lw2alpha.Rd man/lw2beta.Rd man/mat2mrs_data.Rd man/mean_dyn_blocks.Rd man/mean_dyn_pairs.Rd man/mean_dyns.Rd man/median_dyns.Rd man/mrs_data2basis.Rd man/mrs_data2mat.Rd man/mvfftshift.Rd man/n2coord.Rd man/peak_info.Rd man/phase.Rd man/plot.fit_result.Rd man/plot.mrs_data.Rd man/plot_fit_slice.Rd man/plot_fit_slice_inter.Rd man/plot_slice_map.Rd man/plot_slice_map_inter.Rd man/plot_voi_overlay.Rd man/plot_voi_overlay_seg.Rd man/ppm.Rd man/print.fit_result.Rd man/print.mrs_data.Rd man/qn_states.Rd man/rats.Rd man/read_basis.Rd man/read_lcm_coord.Rd man/read_mrs.Rd man/read_mrs_dpt.Rd man/read_mrs_tqn.Rd man/read_tqn_fit.Rd man/read_tqn_result.Rd man/reexports.Rd man/rep_array_dim.Rd man/rep_dyn.Rd man/rep_mrs.Rd man/resample_voi.Rd man/rm_dyns.Rd man/scale_amp_molal_pvc.Rd man/scale_amp_molar.Rd man/scale_amp_ratio.Rd man/scale_amp_water_ratio.Rd man/seconds.Rd man/seq_cpmg_ideal.Rd man/seq_mega_press_ideal.Rd man/seq_press_ideal.Rd man/seq_pulse_acquire.Rd man/seq_pulse_acquire_31p.Rd man/seq_slaser_ideal.Rd man/seq_spin_echo_ideal.Rd man/seq_spin_echo_ideal_31p.Rd man/seq_steam_ideal.Rd man/set_def_acq_paras.Rd man/set_lcm_cmd.Rd man/set_ref.Rd man/set_td_pts.Rd man/set_tqn_cmd.Rd man/shift.Rd man/sim_basis.Rd man/sim_basis_1h_brain.Rd man/sim_basis_1h_brain_press.Rd man/sim_basis_tqn.Rd man/sim_brain_1h.Rd man/sim_mol.Rd man/sim_noise.Rd man/sim_resonances.Rd man/spant-package.Rd man/spant_mpress_drift.Rd man/spin_sys.Rd man/spm_pve2categorical.Rd man/stackplot.Rd man/stackplot.fit_result.Rd man/stackplot.mrs_data.Rd man/sum_coils.Rd man/sum_dyns.Rd man/td2fd.Rd man/td_conv_filt.Rd man/tdsr.Rd man/varpro_3_para_opts.Rd man/varpro_opts.Rd man/vec2mrs_data.Rd man/write_basis.Rd man/write_basis_tqn.Rd man/write_mrs_dpt_v2.Rd man/zero_nzoc.Rd man/zf.Rd man/zf_xy.Rd
spant.Rproj
tests/testthat.R
tests/testthat/def_basis.rds
tests/testthat/fit_res_varpro.rds
tests/testthat/fit_res_varpro_3p.rds
tests/testthat/test_fitting.R tests/testthat/test_preproc.R tests/testthat/test_qm_sim.R
vignettes/.gitignore
vignettes/spant-intro.Rmd
neuroconductor/spant documentation built on Oct. 3, 2018, 8:56 a.m.