list_sumstats: List munged summary statistics

In neurogenomics/MungeSumstats: Standardise summary statistics from GWAS

List munged summary statistics

Description

Searches for and lists local GWAS summary statistics files munged by format_sumstats or import_sumstats.

Usage

list_sumstats(
  save_dir = getwd(),
  pattern = "*.tsv.gz$",
  ids_from_file = TRUE,
  verbose = TRUE
)

Arguments

save_dir	Top-level directory to recursively search for summary statistics files within.
pattern	Regex pattern to search for files with.
ids_from_file	Try to extract dataset IDs from file names. If FALSE, will infer IDs from the directory names instead.
verbose	Print messages.

Value

Named vector of summary stats paths.

Examples

save_dir <- system.file("extdata",package = "MungeSumstats")
munged_files <- MungeSumstats::list_sumstats(save_dir = save_dir)

neurogenomics/MungeSumstats documentation built on Aug. 10, 2024, 5:59 a.m.