load_snp_loc_data: Loads the SNP locations and alleles for Homo sapiens...

In neurogenomics/MungeSumstats: Standardise summary statistics from GWAS

Loads the SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 144. Reference genome version is dependent on user input.

Description

Loads the SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 144. Reference genome version is dependent on user input.

Usage

load_snp_loc_data(ref_genome, dbSNP = c(144, 155), msg = NULL)

Arguments

ref_genome	name of the reference genome used for the GWAS (GRCh37 or GRCh38)
dbSNP	version of dbSNP to be used (144 or 155)
msg	Optional name of the column missing from the dataset in question

Value

SNP_LOC_DATA SNP positions and alleles for Homo sapiens extracted from NCBI dbSNP Build 144

Examples

SNP_LOC_DATA <- load_snp_loc_data("GRCH37",dbSNP=144)

neurogenomics/MungeSumstats documentation built on July 17, 2024, 3:14 p.m.