sort_coords_datatable: Sort sum stats: data.table

In neurogenomics/MungeSumstats: Standardise summary statistics from GWAS

Sort sum stats: data.table

Description

Sort summary statistics table by genomic coordinates using a fast data.table-native strategy

Usage

sort_coords_datatable(
  sumstats_dt,
  chr_col = "CHR",
  start_col = "BP",
  end_col = start_col
)

Arguments

sumstats_dt	data.table obj of the summary statistics file for the GWAS.
chr_col	Chromosome column name.
start_col	Genomic end position column name.

Value

Sorted sumstats_dt

neurogenomics/MungeSumstats documentation built on July 17, 2024, 3:14 p.m.