Files in neuroimaginador/dl4ni
Deep Learning Flows for Neuroimaging
.gitignore
DESCRIPTION
NAMESPACE
R/DLmodel.R
R/DLscheme.R
R/add_layers.R
R/applications.R
R/auto_encoder_functions.R
R/block_categorical.R
R/block_clf.R
R/block_half_double.R
R/block_multivalued.R
R/block_path.R
R/block_regression.R
R/block_resnet.R
R/compile_model.R
R/concatenate_layers.R
R/configuration.R
R/create_generator.R
R/create_inference_function_from_config.R
R/create_model_from_config.R
R/create_vol_layers.R
R/define_last_layer.R
R/dense_unet.R
R/dice_coef.R
R/fit_with_generator.R
R/get_activations.R
R/get_dl4ni_config.R
R/get_maximum_activation.R
R/graph_from_model.R
R/infer_on_volume.R
R/install_python_libraries.R
R/instantiate_model.R
R/instantiate_model_config.R
R/layer_names.R
R/load_keras.R
R/meshnet.R
R/methods_DLmodel.R
R/methods_DLscheme.R
R/normalize_layers.R
R/parse_optimizer.R
R/pipes.R
R/plot_model.R
R/prefixed_schemes.R
R/reset_model.R
R/save_load.R
R/scheme.R
R/segnet.R
R/shapes.R
R/sizes.R
R/test_functions.R
R/unet.R
R/utils.R
R/wrappers.R
R/zzz.R
README.md
TODO
demo/00Index
demo/autoencoder.R
demo/autoencoder_conv.R
demo/bet.R
demo/bet_conv.R
demo/multi_machine.R
demo/multi_machine_conv.R
demo/parcellation.R
demo/parcellation_conv.R
demo/segmentation.R
demo/segmentation_conv.R
demo/t1_flair.R
demo/t1_flair_conv.R
demo/tumor.R
demo/tumor_conv.R
dl4ni.Rproj
inst/.gitignore
inst/applications/isensee_2017_model.h5
inst/applications/lesion_detection_model.h5
inst/applications/sergivalverde_nicMSlesions.hdf5
inst/applications/tumor_segmentation_model_unet.h5
inst/applications/zl376_segDGM_CNN.h5
inst/config/config.properties
man/DLflow.Rd
man/DLflow.add.Rd
man/DLflow.clone.Rd
man/DLflow.execute.Rd
man/DLflow.get_inputs.Rd
man/DLflow.get_model.Rd
man/DLflow.get_outputs.Rd
man/DLflow.graph.Rd
man/DLflow.initialize.Rd
man/DLflow.load.Rd
man/DLflow.name.Rd
man/DLflow.plot.Rd
man/DLflow.replace.Rd
man/DLflow.reset.Rd
man/DLflow.run.Rd
man/DLflow.save.Rd
man/DLflow.subset.Rd
man/DLflow.train.Rd
man/DLmodel.Rd
man/DLmodel.add_to_history.Rd
man/DLmodel.check_memory.Rd
man/DLmodel.clone.Rd
man/DLmodel.errors.Rd
man/DLmodel.fit.Rd
man/DLmodel.get_config.Rd
man/DLmodel.get_decoder.Rd
man/DLmodel.get_encoder.Rd
man/DLmodel.get_history.Rd
man/DLmodel.get_loss.Rd
man/DLmodel.get_model.Rd
man/DLmodel.get_width.Rd
man/DLmodel.graph.Rd
man/DLmodel.infer.Rd
man/DLmodel.initialize.Rd
man/DLmodel.load.Rd
man/DLmodel.log.Rd
man/DLmodel.plot.Rd
man/DLmodel.plot_history.Rd
man/DLmodel.print_log.Rd
man/DLmodel.render_history.Rd
man/DLmodel.reset.Rd
man/DLmodel.reset_history.Rd
man/DLmodel.save.Rd
man/DLmodel.save_log.Rd
man/DLmodel.set_loss.Rd
man/DLmodel.set_width.Rd
man/DLmodel.summary.Rd
man/DLmodel.update.Rd
man/DLmodel.update_render.Rd
man/DLmodel.use_data.Rd
man/DLmodel.warnings.Rd
man/DLscheme.Rd
man/DLscheme.add.Rd
man/DLscheme.clone.Rd
man/DLscheme.from_list.Rd
man/DLscheme.from_model.Rd
man/DLscheme.initialize.Rd
man/DLscheme.instantiate.Rd
man/DLscheme.to_list.Rd
man/add_attribute.Rd
man/add_inputs.Rd
man/add_layers.Rd
man/add_process.Rd
man/add_trainable_model.Rd
man/analyze_input.Rd
man/analyze_output.Rd
man/bce_dice_loss.Rd
man/block_categorical.Rd
man/block_clf.Rd
man/block_double.Rd
man/block_half.Rd
man/block_multivalued.Rd
man/block_paths.Rd
man/block_regression.Rd
man/block_resnet.Rd
man/categorical.Rd
man/clf.Rd
man/clone_flow.Rd
man/compute_batch_size.Rd
man/concatenate_layers.Rd
man/conv3d.Rd
man/convert_to_bytes.Rd
man/create_flow.Rd
man/create_generator.Rd
man/create_generator_from_config.Rd
man/create_inference_function_from_config.Rd
man/create_model_from_config.Rd
man/create_scheme.Rd
man/create_vol_layers.Rd
man/decode.Rd
man/define_config.Rd
man/define_last_layer.Rd
man/dense.Rd
man/dice_coef.Rd
man/dice_loss.Rd
man/double.Rd
man/encode.Rd
man/eval_optimizer.Rd
man/execute_flow.Rd
man/fit_with_generator.Rd
man/gaussian_kernel.Rd
man/get_activations.Rd
man/get_dl4ni_config.Rd
man/get_problem_info.Rd
man/graph_from_model.Rd
man/half.Rd
man/layer_shape.Rd
man/layer_units.Rd
man/load_flow.Rd
man/load_keras.Rd
man/load_model.Rd
man/map_ids.Rd
man/model_size.Rd
man/multivalued.Rd
man/normalize_layers.Rd
man/object_shape.Rd
man/ortho_plot.Rd
man/parse_optimizer.Rd
man/plot_flow.Rd
man/plot_graph.Rd
man/prepare_files_for_inference.Rd
man/read_nifti_to_array.Rd
man/regression.Rd
man/reset_flow.Rd
man/reset_outputs.Rd
man/resnet.Rd
man/save_flow.Rd
man/save_model.Rd
man/scale_max.Rd
man/scale_max_masked.Rd
man/scale_meanmax.Rd
man/scale_meanmax_masked.Rd
man/scale_z.Rd
man/scale_z_masked.Rd
man/segnet.Rd
man/set_trainability.Rd
man/smooth_by_gaussian_kernel.Rd
man/split_train_test_sets.Rd
man/subset_flow.Rd
man/subset_problem.Rd
man/to_categorical_volume.Rd
man/train_output.Rd
man/transform_coords.Rd
man/unet.Rd
man/which_to_compute.Rd
tests/.gitignore
tests/testthat.R
tests/testthat/.gitignore
tests/testthat/test_DLmodel.R
tests/testthat/test_DLscheme.R
tests/testthat/test_RcppExports.R
tests/testthat/test_add_layers.R
tests/testthat/test_auto_encoder_functions.R
tests/testthat/test_block_categorical.R
tests/testthat/test_block_clf.R
tests/testthat/test_block_half_double.R
tests/testthat/test_block_multivalued.R
tests/testthat/test_block_path.R
tests/testthat/test_block_regression.R
tests/testthat/test_block_resnet.R
tests/testthat/test_concatenate_layers.R
tests/testthat/test_configuration.R
tests/testthat/test_create_generator.R
tests/testthat/test_create_generator_from_config.R
tests/testthat/test_create_inference_function_from_config.R
tests/testthat/test_create_model_from_config.R
tests/testthat/test_create_vol_layers.R
tests/testthat/test_define_last_layer.R
tests/testthat/test_dice_coef.R
tests/testthat/test_fit_with_generator.R
tests/testthat/test_get_activations.R
tests/testthat/test_get_dl4ni_config.R
tests/testthat/test_get_maximum_activation.R
tests/testthat/test_graph_from_model.R
tests/testthat/test_infer_on_volume.R
tests/testthat/test_instantiate_model.R
tests/testthat/test_instantiate_model_config.R
tests/testthat/test_load_keras.R
tests/testthat/test_meshnet.R
tests/testthat/test_methods_DLmodel.R
tests/testthat/test_methods_DLscheme.R
tests/testthat/test_normalize_layers.R
tests/testthat/test_parse_optimizer.R
tests/testthat/test_plot_model.R
tests/testthat/test_prefixed_schemes.R
tests/testthat/test_reset_model.R
tests/testthat/test_save_load.R
tests/testthat/test_scheme.R
tests/testthat/test_segnet.R
tests/testthat/test_set_trainability.R
tests/testthat/test_shapes.R
tests/testthat/test_sizes.R
tests/testthat/test_unet.R
tests/testthat/test_utils.R
tests/testthat/test_wrappers.R
tests/testthat/test_zzz.R
