Files in neuroimaginador/dl4ni
Deep Learning Flows for Neuroimaging

.gitignore
DESCRIPTION
NAMESPACE
R/DLmodel.R R/DLscheme.R R/add_layers.R R/applications.R R/auto_encoder_functions.R R/block_categorical.R R/block_clf.R R/block_half_double.R R/block_multivalued.R R/block_path.R R/block_regression.R R/block_resnet.R R/compile_model.R R/concatenate_layers.R R/configuration.R R/create_generator.R R/create_inference_function_from_config.R R/create_model_from_config.R R/create_vol_layers.R R/define_last_layer.R R/dense_unet.R R/dice_coef.R R/fit_with_generator.R R/get_activations.R R/get_dl4ni_config.R R/get_maximum_activation.R R/graph_from_model.R R/infer_on_volume.R R/install_python_libraries.R R/instantiate_model.R R/instantiate_model_config.R R/layer_names.R R/load_keras.R R/meshnet.R R/methods_DLmodel.R R/methods_DLscheme.R R/normalize_layers.R R/parse_optimizer.R R/pipes.R R/plot_model.R R/prefixed_schemes.R R/reset_model.R R/save_load.R R/scheme.R R/segnet.R R/shapes.R R/sizes.R R/test_functions.R R/unet.R R/utils.R R/wrappers.R R/zzz.R README.md
TODO
demo/00Index
demo/autoencoder.R demo/autoencoder_conv.R demo/bet.R demo/bet_conv.R demo/multi_machine.R demo/multi_machine_conv.R demo/parcellation.R demo/parcellation_conv.R demo/segmentation.R demo/segmentation_conv.R demo/t1_flair.R demo/t1_flair_conv.R demo/tumor.R demo/tumor_conv.R
dl4ni.Rproj
inst/.gitignore
inst/applications/isensee_2017_model.h5
inst/applications/lesion_detection_model.h5
inst/applications/sergivalverde_nicMSlesions.hdf5
inst/applications/tumor_segmentation_model_unet.h5
inst/applications/zl376_segDGM_CNN.h5
inst/config/config.properties
man/DLflow.Rd man/DLflow.add.Rd man/DLflow.clone.Rd man/DLflow.execute.Rd man/DLflow.get_inputs.Rd man/DLflow.get_model.Rd man/DLflow.get_outputs.Rd man/DLflow.graph.Rd man/DLflow.initialize.Rd man/DLflow.load.Rd man/DLflow.name.Rd man/DLflow.plot.Rd man/DLflow.replace.Rd man/DLflow.reset.Rd man/DLflow.run.Rd man/DLflow.save.Rd man/DLflow.subset.Rd man/DLflow.train.Rd man/DLmodel.Rd man/DLmodel.add_to_history.Rd man/DLmodel.check_memory.Rd man/DLmodel.clone.Rd man/DLmodel.errors.Rd man/DLmodel.fit.Rd man/DLmodel.get_config.Rd man/DLmodel.get_decoder.Rd man/DLmodel.get_encoder.Rd man/DLmodel.get_history.Rd man/DLmodel.get_loss.Rd man/DLmodel.get_model.Rd man/DLmodel.get_width.Rd man/DLmodel.graph.Rd man/DLmodel.infer.Rd man/DLmodel.initialize.Rd man/DLmodel.load.Rd man/DLmodel.log.Rd man/DLmodel.plot.Rd man/DLmodel.plot_history.Rd man/DLmodel.print_log.Rd man/DLmodel.render_history.Rd man/DLmodel.reset.Rd man/DLmodel.reset_history.Rd man/DLmodel.save.Rd man/DLmodel.save_log.Rd man/DLmodel.set_loss.Rd man/DLmodel.set_width.Rd man/DLmodel.summary.Rd man/DLmodel.update.Rd man/DLmodel.update_render.Rd man/DLmodel.use_data.Rd man/DLmodel.warnings.Rd man/DLscheme.Rd man/DLscheme.add.Rd man/DLscheme.clone.Rd man/DLscheme.from_list.Rd man/DLscheme.from_model.Rd man/DLscheme.initialize.Rd man/DLscheme.instantiate.Rd man/DLscheme.to_list.Rd man/add_attribute.Rd man/add_inputs.Rd man/add_layers.Rd man/add_process.Rd man/add_trainable_model.Rd man/analyze_input.Rd man/analyze_output.Rd man/bce_dice_loss.Rd man/block_categorical.Rd man/block_clf.Rd man/block_double.Rd man/block_half.Rd man/block_multivalued.Rd man/block_paths.Rd man/block_regression.Rd man/block_resnet.Rd man/categorical.Rd man/clf.Rd man/clone_flow.Rd man/compute_batch_size.Rd man/concatenate_layers.Rd man/conv3d.Rd man/convert_to_bytes.Rd man/create_flow.Rd man/create_generator.Rd man/create_generator_from_config.Rd man/create_inference_function_from_config.Rd man/create_model_from_config.Rd man/create_scheme.Rd man/create_vol_layers.Rd man/decode.Rd man/define_config.Rd man/define_last_layer.Rd man/dense.Rd man/dice_coef.Rd man/dice_loss.Rd man/double.Rd man/encode.Rd man/eval_optimizer.Rd man/execute_flow.Rd man/fit_with_generator.Rd man/gaussian_kernel.Rd man/get_activations.Rd man/get_dl4ni_config.Rd man/get_problem_info.Rd man/graph_from_model.Rd man/half.Rd man/layer_shape.Rd man/layer_units.Rd man/load_flow.Rd man/load_keras.Rd man/load_model.Rd man/map_ids.Rd man/model_size.Rd man/multivalued.Rd man/normalize_layers.Rd man/object_shape.Rd man/ortho_plot.Rd man/parse_optimizer.Rd man/plot_flow.Rd man/plot_graph.Rd man/prepare_files_for_inference.Rd man/read_nifti_to_array.Rd man/regression.Rd man/reset_flow.Rd man/reset_outputs.Rd man/resnet.Rd man/save_flow.Rd man/save_model.Rd man/scale_max.Rd man/scale_max_masked.Rd man/scale_meanmax.Rd man/scale_meanmax_masked.Rd man/scale_z.Rd man/scale_z_masked.Rd man/segnet.Rd man/set_trainability.Rd man/smooth_by_gaussian_kernel.Rd man/split_train_test_sets.Rd man/subset_flow.Rd man/subset_problem.Rd man/to_categorical_volume.Rd man/train_output.Rd man/transform_coords.Rd man/unet.Rd man/which_to_compute.Rd
tests/.gitignore
tests/testthat.R
tests/testthat/.gitignore
tests/testthat/test_DLmodel.R tests/testthat/test_DLscheme.R tests/testthat/test_RcppExports.R tests/testthat/test_add_layers.R tests/testthat/test_auto_encoder_functions.R tests/testthat/test_block_categorical.R tests/testthat/test_block_clf.R tests/testthat/test_block_half_double.R tests/testthat/test_block_multivalued.R tests/testthat/test_block_path.R tests/testthat/test_block_regression.R tests/testthat/test_block_resnet.R tests/testthat/test_concatenate_layers.R tests/testthat/test_configuration.R tests/testthat/test_create_generator.R tests/testthat/test_create_generator_from_config.R tests/testthat/test_create_inference_function_from_config.R tests/testthat/test_create_model_from_config.R tests/testthat/test_create_vol_layers.R tests/testthat/test_define_last_layer.R tests/testthat/test_dice_coef.R tests/testthat/test_fit_with_generator.R tests/testthat/test_get_activations.R tests/testthat/test_get_dl4ni_config.R tests/testthat/test_get_maximum_activation.R tests/testthat/test_graph_from_model.R tests/testthat/test_infer_on_volume.R tests/testthat/test_instantiate_model.R tests/testthat/test_instantiate_model_config.R tests/testthat/test_load_keras.R tests/testthat/test_meshnet.R tests/testthat/test_methods_DLmodel.R tests/testthat/test_methods_DLscheme.R tests/testthat/test_normalize_layers.R tests/testthat/test_parse_optimizer.R tests/testthat/test_plot_model.R tests/testthat/test_prefixed_schemes.R tests/testthat/test_reset_model.R tests/testthat/test_save_load.R tests/testthat/test_scheme.R tests/testthat/test_segnet.R tests/testthat/test_set_trainability.R tests/testthat/test_shapes.R tests/testthat/test_sizes.R tests/testthat/test_unet.R tests/testthat/test_utils.R tests/testthat/test_wrappers.R tests/testthat/test_zzz.R
neuroimaginador/dl4ni documentation built on Nov. 3, 2018, 12:14 a.m.