Files in nickbrazeau/polyIBD
Assessing Identity by Descent in Polyclonal Infections

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/.Rhistory
R/MCMC_components.R R/RcppExports.R R/baseplotting.R R/catch-routine-registration.R R/data.R R/ggplotting.R R/main.R R/misc.R R/polyIBD.R R/wrangling.R README.md
appveyor.yml
codecov.yml
data/pfcross_subset.rda
docs/LICENSE-text.html
docs/articles/index.html
docs/articles/polyIBD.html
docs/articles/polyIBD_files/figure-html/unnamed-chunk-1-1.png
docs/articles/polyIBD_files/figure-html/unnamed-chunk-1-2.png
docs/articles/polyIBD_files/figure-html/unnamed-chunk-6-1.png
docs/articles/polyIBD_files/figure-html/unnamed-chunk-6-2.png
docs/articles/polyIBD_files/figure-html/unnamed-chunk-7-1.png
docs/articles/polyIBD_files/figure-html/unnamed-chunk-7-2.png
docs/authors.html
docs/docsearch.css
docs/index.html
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docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/genautocorr.html
docs/reference/genautocorr_filter.html
docs/reference/getTransProbs.html
docs/reference/ggplot_IBD.html
docs/reference/ggplot_IBDraster.html
docs/reference/ggplot_SNPs_IBD.html
docs/reference/ggplot_f.html
docs/reference/ggplot_f_postprob.html
docs/reference/ggplot_k.html
docs/reference/ggplot_m1.html
docs/reference/ggplot_m2.html
docs/reference/ggplot_rho.html
docs/reference/index.html
docs/reference/plot.polyIBD.html
docs/reference/plot_IBD.html
docs/reference/plot_f.html
docs/reference/plot_k.html
docs/reference/plot_m1.html
docs/reference/plot_m2.html
docs/reference/plot_rho.html
docs/reference/polyIBD-package.html
docs/reference/polyIBD.html
docs/reference/rcpp_hello_world.html
docs/reference/runMCMC.html
docs/reference/simData.html
docs/reference/simIBD.html
docs/reference/vcf2infSNPmatrix.html
docs/reference/vcf2polyIBDinput.html
docs/reference/vcffilter.html
figures/IBD_match_sim.png
man/extract_polyIBD_summary.Rd man/getTransProbs.Rd man/ggplot_IBD.Rd man/ggplot_IBDraster.Rd man/ggplot_f.Rd man/ggplot_f_postprob.Rd man/ggplot_k.Rd man/ggplot_m1.Rd man/ggplot_m2.Rd man/ggplot_trace.Rd man/pfcross_subset.Rd man/plot.polyIBD.Rd man/plot_IBD.Rd man/plot_f.Rd man/plot_k.Rd man/plot_m1.Rd man/plot_m2.Rd man/polyIBD-package.Rd man/polyIBD.Rd man/polyIBD_iterations2tidy.Rd man/polyibdggtheme.Rd man/runMCMC.Rd man/simData.Rd man/simIBD.Rd man/vcf2polyIBDinput.Rd
src/.cproject
src/.project
src/.settings/language.settings.xml
src/MCMC.cpp
src/MCMC.h
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/main.cpp
src/misc.cpp
src/misc.h
src/probability.cpp
src/probability.h
src/test-polyIBDMCMC.cpp
src/test-runner.cpp
tests/testthat.R tests/testthat/test-cpp.R tests/testthat/test-polyIBDinput.R vignettes/polyIBD.Rmd vignettes/quickstart.Rmd
nickbrazeau/polyIBD documentation built on May 15, 2019, 3:16 p.m.