simIBD: Simulate IBD sections between two samples
In nickbrazeau/polyIBD: polyIBD: Inferring blocks of identity by descent between polyclonal samples using unphased haplotype data
Description
Walks along a vector of genomic locations and swiches between two states that represent IBD and non-IBD using a Markov model. The parameters that dictate the chance of switching state at any point include the average level of relatedness (f), the physical distance between loci in units of base pairs (from pos), and the recombination rate (rho), which is assumed constant over all loci.
Usage
1
simIBD(f, k, rho, pos)
Arguments
f
the average relatedness between the two samples
k
the number of generations separating the two lineages
rho
the recombination rate. TODO - units of this parameter
pos
the genomic positions of the sites of interest
nickbrazeau/polyIBD documentation built on Dec. 1, 2019, 11:53 p.m.
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Description
Walks along a vector of genomic locations and swiches between two states that represent IBD and non-IBD using a Markov model. The parameters that dictate the chance of switching state at any point include the average level of relatedness (f), the physical distance between loci in units of base pairs (from pos), and the recombination rate (rho), which is assumed constant over all loci.
Usage
1 | simIBD(f, k, rho, pos)
|
Arguments
f |
the average relatedness between the two samples |
k |
the number of generations separating the two lineages |
rho |
the recombination rate. TODO - units of this parameter |
pos |
the genomic positions of the sites of interest |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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