get_case_count_by_source: Get case-control status (Any) by data sources

In niekverw/ukbpheno: Extraction and processing UK Biobank data to generate health outcome phenotypes

Get case-control status (Any) by data sources

Description

Given a phenotype, a list of episode data and reference dates per individual, identify cases and control status as of *reference date" by source.

Usage

get_case_count_by_source(
  definition,
  lst.data,
  df.data.settings,
  vct.identifiers,
  remove_event0 = TRUE
)

Arguments

definition	phenotype/trait specified in definition table (a row in the table)
lst.data	list of data table with all episode data
df.data.settings	data frame containing data settings
vct.identifiers	character vector listing the identifiers in the cohort. This is used to define controls if reference_date is not given

niekverw/ukbpheno documentation built on Oct. 30, 2023, 9:17 p.m.