get_lst_counts: Get summary counts on a list of data tables

In niekverw/ukbpheno: Extraction and processing UK Biobank data to generate health outcome phenotypes

Get summary counts on a list of data tables

Description

This function reads list of episode data in data tables and return summary counts by classification systems according to lst.data.settings.

Usage

get_lst_counts(lst.data, lst.data.settings)

Arguments

lst.data	list of data tables
lst.data.settings	data.setting as dataframe

Value

a list of data tables of summary counts organized in classifications

Examples

lst.data.settings <-fread(data.settings.tsv)
lst.data <- list()
lst.data$ts <- convert_touchscreen_to_episodedata(dfukb,ts_conditions = dfDefinitions_processed$TS)
lst.data$tte.sr.20002 <- convert_nurseinterview_to_episodedata(dfukb,field_sr_diagnosis = "20002",field_sr_date = "20008",qc_treshold_year = 10)
lst.data <- append(lst.data,read_hesin_data(fhesin ,fhesin_diag ,fhesin_oper ))
get_lst_counts(lst.data,lst.data.settings)

niekverw/ukbpheno documentation built on Oct. 30, 2023, 9:17 p.m.