Description Usage Arguments Details Value Author(s) See Also Examples
This function is used to fit a model of points at a regular interval to a sample of points in one dimension. The function is used by measureCheckerboardSize to estimate the solution to the inter-point distance of points along a line or in a grid.
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gridPointsFit(p, nx, ny=NULL)
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| p | The parameters defining the regular point distribution. When  | 
| nx | The number of points to be created at regular spacing along one dimension. | 
| ny | The number of points to be created at regular spacing along a second dimension. | 
This function is used to fit a model of points at a regular interval to a sample of points in one dimension. The function is used by measureCheckerboardSize to estimate the solution to the inter-point distance of points along a line or in a grid. To fit a model to points along lines and grids in two dimensions, each dimension is fit separately. A best fit estimate of the true interval between points can then be calculated from the optimized parameters. See the examples below for how to use gridPointsFit() to estimate the inter-point intervals of line and grid points.
a vector of length nx*ny.
Aaron Olsen
| 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 | ## ESTIMATE LINE INTER-POINT INTERVAL
# GENERATE POINTS AT A REGULAR INTERVAL WITH NORMAL, RANDOM VARIATION
pts <- cbind((1:500) + rnorm(500, sd=1), (1:500) + rnorm(500, sd=1))
# FIND THE MEAN SUCCESSIVE POINT-TO-DISTANCE
# NOTE THAT THIS CONSISTENTLY OVERESTIMATES THE TRUE INTERVAL
mean(sqrt(rowSums((pts[2:nrow(pts), ] - pts[1:(nrow(pts)-1), ])^2)))
# FIT A REGULARLY SPACED POINTS MODEL TO EACH DIMENSION OF THE POINTS MATRIX
fit_x <- nlminb(start=c(pts[1, 1], pts[2, 1]-pts[1, 1]), 
    objective=gridPointsFitError, nx=nrow(pts), points=pts[, 1])
fit_y <- nlminb(start=c(pts[1, 2], pts[2, 2]-pts[1, 2]), 
    objective=gridPointsFitError, nx=nrow(pts), points=pts[, 2])
# FIND THE BEST FIT INTER-POINT DISTANCE
# MORE ACCURATELY RECOVERS TRUE INTERVAL
sqrt(fit_x$par[2]^2 + fit_y$par[2]^2)
## ESTIMATE REGULAR GRID SQUARE SIZE
# GENERATE A REGULAR GRID WITH NORMAL, RANDOM VARIATION
corners <- cbind(
    rep(1:20, 20) + rnorm(20^2, sd=0.1), 
    c(t(matrix(1:20, nrow=20, ncol=20))) + rnorm(20^2, sd=0.1))
# FIT A REGULARLY SPACED POINTS MODEL TO EACH DIMENSION OF THE POINTS MATRIX
fit_x <- nlminb(
    start=c(corners[1, 1], corners[2, 1]-corners[1, 1], 0),
    objective=gridPointsFitError, points=corners[, 1], nx=20, ny=20)
fit_y <- nlminb(
    start=c(corners[1, 2], corners[2, 2]-corners[1, 2], 0),
    objective=gridPointsFitError, points=corners[, 2], nx=20, ny=20)
# FIND THE BEST FIT INTER-POINT DISTANCE (SQUARE SIZE)
sqrt(fit_x$par[2]^2 + fit_y$par[2]^2)
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