API for nixstix/RNASeqAnalysis
Analysis of RNA-Seq data: QC filtering, expression analysis, differential expression pipeline
| Global functions | |
|---|---|
| addKallistoResToTable | Man page Source code |
| availableReferences | Man page Source code |
| checkColHeadings | Source code |
| checkDataFile | Man page Source code |
| collectKallistoCounts | Man page Source code |
| collectKallistoCountsTXItoGene | Man page Source code |
| compareQA | Man page Source code |
| consolidateData | Source code |
| dataFilePE | Source code |
| dataFileSE | Source code |
| datafileTemplate | Man page |
| filterAndTrimPE | Source code |
| filterAndTrimSE | Source code |
| filterBadSeqs | Man page Source code |
| getResults | Source code |
| kallistoIndex | Man page Source code |
| kallistoQuant | Man page Source code |
| kallistoQuantRunPE | Source code |
| kallistoQuantRunSE | Source code |
| replFiltfile | Source code |
| runQA | Man page Source code |
| summariseFilteringStats | Man page Source code |
