availableReferences: A number of transcriptome indices have already been built,...

Description Usage Arguments Value Examples

View source: R/kallisto.R

Description

A number of transcriptome index files (.idx files) have been pre-built and provided with the package. These files may be used as input to the kallsitoQuant pseudoalignment function (or the user may provide his/her own transcriptome file). The availableReferences function provides a list of these ready-available transcriptomes.

Usage

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Arguments

none

No parameters.

Value

list A list of available transcriptome indices (.idx files).

Examples

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nixstix/RNASeqAnalysis documentation built on May 23, 2019, 7:06 p.m.