availableReferences: A number of transcriptome indices have already been built,...
In nixstix/RNASeqAnalysis: Analysis of RNA-Seq data: QC filtering, expression analysis, differential expression pipeline
Description
Usage
Arguments
Value
Examples
Description
A number of transcriptome index files (.idx files) have been pre-built and provided with the package. These files may be used as input to the kallsitoQuant pseudoalignment function (or the user may provide his/her own transcriptome file). The availableReferences function provides a list of these ready-available transcriptomes.
Usage
1
Arguments
none
No parameters.
Value
list A list of available transcriptome indices (.idx files).
Examples
1
2
nixstix/RNASeqAnalysis documentation built on May 23, 2019, 7:06 p.m.
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Description Usage Arguments Value Examples
Description
A number of transcriptome index files (.idx files) have been pre-built and provided with the package. These files may be used as input to the kallsitoQuant pseudoalignment function (or the user may provide his/her own transcriptome file). The availableReferences function provides a list of these ready-available transcriptomes.
Usage
1 |
Arguments
none |
No parameters. |
Value
list A list of available transcriptome indices (.idx files).
Examples
1 2 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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