Files in nixstix/RNASeqAnalysis
Analysis of RNA-Seq data: QC filtering, expression analysis, differential expression pipeline
.DS_Store
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/.DS_Store
R/checkDataFile.R
R/datasetDocumentation.R
R/kallisto.R
R/kallistoRes.R
R/qa.R
R/qaComp.R
R/qc.R
R/qcStats.R
RNASeqAnalysis.Rproj
data/.DS_Store
data/datafileExample.rda
data/datafileTemplate.rda
inst/.DS_Store
inst/doc/RNASeqAnalysis-manual.pdf
inst/doc/analysisPipeline.R
inst/doc/analysisPipeline.Rmd
inst/doc/analysisPipeline.pdf
inst/extdata/.DS_Store
inst/extdata/DESeq/tx2gene.csv
inst/extdata/Homo_sapiens.GRCh38.rel79.cdna.all-kallisto.fa.gz
inst/extdata/Kallisto-index/.DS_Store
inst/extdata/Kallisto-index/kallisto.idx
inst/extdata/RNA-Seq-data/data3.csv
inst/extdata/RNA-Seq-data/reads_10r_1.fastq.gz
inst/extdata/RNA-Seq-data/reads_10r_2.fastq.gz
inst/extdata/RNA-Seq-data/reads_N.fastq.gz
inst/extdata/transcripts.fasta.gz
man/.Rapp.history
man/addKallistoResToTable.Rd
man/availableReferences.Rd
man/checkDataFile.Rd
man/collectKallistoCounts.Rd
man/collectKallistoCountsTXItoGene.Rd
man/compareQA.Rd
man/datafileTemplate.Rd
man/filterBadSeqs.Rd
man/kallistoIndex.Rd
man/kallistoQuant.Rd
man/runQA.Rd
man/summariseFilteringStats.Rd
userTests/data3.csv
userTests/reads_10r_1.fastq.gz
userTests/reads_10r_2.fastq.gz
userTests/reads_N.fastq.gz
vignettes/analysisPipeline.Rmd
