Description Usage Arguments Value
Pearson correlation distance for continuous data: d = (1- cor(x_i, x_j))/2 where cor(x_i, x_j) is the correlation between vector x_i and vector x_j.
1 2  | 
X | 
 A data matrix, e.g. gene expression  | 
method | 
 a character string indicating which correlation coefficient is to be computed. One of "pearson" (default), "kendall", or "spearman": can be abbreviated.  | 
scale | 
 A boolean indicating whether to normalize the columns (samples) of the data to the even sum.  | 
base | 
 A numeric value for the shared column sum, if scale is TRUE.  | 
log_trans | 
 A boolean indicating whether to log transform the data prio to distance computation (log(X + 1)). Default is FALSE.  | 
log_base | 
 A number indicating base for log transformation. Default is 10.  | 
A dissimilarity matrix, D.
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