plot_buds_trajectory: Plot data trajectory in 2 or3D
In nlhuong/buds: Bayesian Unidimensional Scaling (BUDS)

Description Usage Arguments Value

Plot 2 or 3D representations of the data with PCoA of t-SNE, together with posterior data trajectories (paths) computed with BUDS.

1
2
3

plot_buds_trajectory(budsParams, Y, eigs = NULL, sample_data = NULL,
  covariate_name = "covariate", path_col = "#2171B5", nPaths = 50,
  nCenters = 50)

`budsParams`	A list of parameters extracted from BUDS stanfit object.
`Y`	A data frame with 2D representation of the data
`eigs`	[Optional] A vector of eigenvalues corresponding to columns of Y.
`sample_data`	[Optional] A data frame with sample data.
`covariate_name`	[Optional] A charcter string for the column of sample_data to use for coloring points.
`path_col`	[Optional] A charcter string for the color of the posterior paths. Default is "#2171B5".
`nPaths`	[Optional] An integer for number of posterior paths to include. Default is 50.
`nCenters`	[Optional] An integer for number of data points to use for the highlighted "mode-path". Default is 50.