plot_ord: Plot PCoA

In nlhuong/buds: Bayesian Unidimensional Scaling (BUDS)

Description

Plot a Principal Coordinate Analysis coordinates

Usage

plot_ord(ord_res, ord_eig = NULL, size = 1, colData = NULL,
  colLabel = "Variable", title = "Ordination plot",
  prin_curve = FALSE, edgesCol = "grey57", pathCol = "#2171B5",
  lwd = 1.5, ...)

Arguments

ord_res	rordination coordinates
ord_eig	eigenvalues of the ordination
size	size of the segments connecting datapoints to the principal curve
colData	[Optional] covariates to color the points
colLabel	[Optional] label for the covariate
title	[Optional] title of the plot
prin_curve	[Optional] boolean whether to include a principal curve
edgesCol	[Optional] color of the segments. Default "grey".
pathCol	[Optional] color of the path. Default "#2171B5".
lwd	[Optional] path line width
...	other graphical parameters

Value

A ggplot2 object.

nlhuong/buds documentation built on May 17, 2019, 3:13 a.m.