saveClusteredCells: Saving clones to user-defined output.

Usage Arguments Details

View source: R/saveClusteredCells.R

Usage

1
saveClusteredCells(outc, outD, sName)

Arguments

outc

Output of clusterCells or assignCellsToClusters: list containing segment-by-cell matrix, clone membership of each cell and phylogenetic tree.

Details

Saves:
1. The clone membership of each cell (*.spstats)
2. The segment-by-cell matrix of copy number states (*.sc.cbs)
3. The consensus copy number profile of each detected clone, calculated as the average profile of cells that are members of the respective clone (*.sps.cbs)
4. The phylogeny (*.tree).


noemiandor/liayson documentation built on Oct. 27, 2018, 12:15 a.m.