Man pages for northNomad/tapestri.tools
A toolbox for the analysis of tapestri single cell multi-omics data
| get_cells_index | Getting the column index of interesting cells |
| get_flt3itd | Getting FLT3 internal tandem duplication (ITD) variants |
| get_protein_ids | Get protein ids |
| get_variants | Getting variants called by haplotype caller in tapestri... |
| get_variants_index | Getting the row index of interesting variants |
| plot_protein_by_clones | Plot protein abundance across clones |
| plot_upset_with_variants | Plot an upsetplot |
| plot_vaf_by_clones | Plot VAF of variants across clones |
| read_amplicons_bed | Read tapestri amplicons |
| read_assays_variants | Reading the assays of variants |
| read_h5 | Reading a tapestri h5 file |
| read_protein_counts | Reading protein read counts |
| read_scite_output | Read SCITE output |
| read_vep_output | Read ENSEMBL VEP output |
| write_scite_inputs | Write input files for SCITE |
| write_vep_input | Write input files for ENSEMBL VEP |
