write_vep_input: Write input files for ENSEMBL VEP
In northNomad/tapestri.tools: A toolbox for the analysis of tapestri single cell multi-omics data
write_vep_input R Documentation
Write input files for ENSEMBL VEP
Description
A helper function to write standard input files for ENSEMBL VEP.
Usage
write_vep_input(dt_variants, file)
Arguments
dt_variants
A (filtered) data.frame or data.table of variants derived from get_variants
file
file path to write .txt file.
Value
NULL. Writes the standard VEP .txt input file.
#' @examples
dt.var <- get_variants(h5f)
write_vep_input(dt.var, "vep_input.txt")
References
https://useast.ensembl.org/info/docs/tools/vep/vep_formats.html
northNomad/tapestri.tools documentation built on May 31, 2024, 4:44 p.m.
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| write_vep_input | R Documentation |
Write input files for ENSEMBL VEP
Description
A helper function to write standard input files for ENSEMBL VEP.
Usage
write_vep_input(dt_variants, file)
Arguments
dt_variants |
A (filtered) |
file |
file path to write .txt file. |
Value
NULL. Writes the standard VEP .txt input file. #' @examples
dt.var <- get_variants(h5f) write_vep_input(dt.var, "vep_input.txt")
References
https://useast.ensembl.org/info/docs/tools/vep/vep_formats.html
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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