read_protein_counts: Reading protein read counts

In northNomad/tapestri.tools: A toolbox for the analysis of tapestri single cell multi-omics data

Reading protein read counts

Description

read_protein_counts retrieves the protein read counts in an h5f.

Usage

read_protein_counts(
  h5f,
  transpose = c(TRUE, FALSE),
  index_cells = NULL,
  normalization = c("clr", "raw")
)

Arguments

h5f	h5f
transpose	Boolean. If TRUE, columns represent proteins and rows represent cells.
index_cells	A numeric vector. Specifies which cells to retrieve.
normalization	Either clr or raw. Defaults to clr, as implemented by the compositions package.

Value

matrix

Examples

path <- "path/to/.h5"
h5f <- read_h5(path)

read_protein_counts(h5f)

northNomad/tapestri.tools documentation built on May 31, 2024, 4:44 p.m.