API for nspope/radish
Fast gradient-based optimization of resistance surfaces
| Global functions | |
|---|---|
| AIC.radish | Source code |
| BoxConstrainedBFGS | Source code |
| BoxConstrainedNewton | Source code |
| HagerZhangControl | Man page Source code |
| Lattice1D | Source code |
| NewtonRaphsonControl | Man page Source code |
| TrustRegionSubproblem | Source code |
| anova.radish | Source code |
| assemble_model_matrix | Source code |
| backpropagate_conductance_to_laplacian | Source code |
| backpropagate_laplacian_to_conductance | Source code |
| bisect | Source code |
| coef.radish | Source code |
| conductance | Source code |
| conductance.radish_graph | Source code |
| conductance_surface | Man page Source code |
| cov_from_biallelic | Man page Source code |
| dist_from_biallelic | Man page Source code |
| dist_from_cov | Man page Source code |
| extract_benchmark_timing | Source code |
| fitted.radish | Source code |
| fst_from_biallelic | Man page Source code |
| generalized_wishart | Man page Source code |
| hzupdate | Source code |
| leastsquares | Man page Source code |
| linear_conductance | Man page Source code |
| logLik.radish | Source code |
| loglinear_conductance | Man page Source code |
| mlpe | Man page Source code |
| print.radish | Source code |
| print.summary.radish | Source code |
| radish | Man page Source code |
| radish_algorithm | Man page Source code |
| radish_conductance_model_factory | Man page |
| radish_distance | Man page Source code |
| radish_grid | Man page Source code |
| radish_measurement_model | Man page |
| radish_subproblem | Source code |
| resid.radish | Source code |
| run_benchmarks | Source code |
| satisfies_wolfe | Source code |
| secant | Source code |
| secant0 | Source code |
| secant2 | Source code |
| simulate.radish | Source code |
| summary.radish | Source code |
| wishart_simulate_distance | Source code |
| wishart_simulate_experiment | Source code |
