Files in nspope/radish
Fast gradient-based optimization of resistance surfaces
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/.gitignore
R/RcppExports.R
R/backtracking.R
R/bfgs.R
R/generalized_wishart.R
R/genetic_distance.R
R/hager_zhang.R
R/leastsquares.R
R/mlpe.R
R/newton_raphson.R
R/radish_algorithm.R
R/radish_conductance_model.R
R/radish_graph.R
R/radish_grid.R
R/radish_measurement_model.R
R/radish_optimize.R
R/radish_subproblem.R
R/sr1.R
README.md
TODO
cleanup
configure
configure.ac
data/melip.RData
man/HagerZhangControl.Rd
man/NewtonRaphsonControl.Rd
man/conductance_surface.Rd
man/cov_from_biallelic.Rd
man/dist_from_biallelic.Rd
man/dist_from_cov.Rd
man/fst_from_biallelic.Rd
man/generalized_wishart.Rd
man/leastsquares.Rd
man/linear_conductance.Rd
man/loglinear_conductance.Rd
man/mlpe.Rd
man/radish.Rd
man/radish_algorithm.Rd
man/radish_conductance_model_factory.Rd
man/radish_distance.Rd
man/radish_grid.Rd
man/radish_measurement_model.Rd
ms/.gitignore
ms/.gradient_validation.R.swp
ms/gradient_validation.R.bkp
ms/likelihood_surface.png
src/.gitignore
src/Makevars.in
src/Makevars.win
src/RcppExports.cpp
src/radish.cpp
