API for nucleosome-dynamics/nucleR
Nucleosome positioning package for R
| Global functions | |
|---|---|
| .check.mc | Source code |
| .doPlot | Source code |
| .export.bed | Source code |
| .fftRegion | Man page |
| .filterFFT | Source code |
| .getThreshold | Man page |
| .loadFiles | Man page |
| .loadPairedBam | Man page |
| .loadSingleBam | Man page |
| .mid | Man page Source code |
| .pad2power2 | Source code |
| .processStrand | Man page |
| .unlist_as_integer | Man page |
| .vectorizedAll | Man page Source code |
| .xlapply | Man page Source code |
| controlCorrection | Man page |
| controlCorrection,Rle-method | Man page |
| controlCorrection,SimpleRleList-method | Man page |
| controlCorrection,list-method | Man page |
| controlCorrection,numeric-method | Man page |
| coverage.rpm | Man page |
| coverage.rpm,CompressedGRangesList-method | Man page |
| coverage.rpm,GRanges-method | Man page |
| coverage.rpm,IRanges-method | Man page |
| export.bed | Man page |
| export.bed,CompressedIRangesList-method | Man page |
| export.bed,GRanges-method | Man page |
| export.bed,IRanges-method | Man page |
| export.wig | Man page |
| filterFFT | Man page |
| filterFFT,Rle-method | Man page |
| filterFFT,SimpleRleList-method | Man page |
| filterFFT,list-method | Man page |
| filterFFT,numeric-method | Man page |
| fragmentLenDetect | Man page |
| fragmentLenDetect,AlignedRead-method | Man page |
| fragmentLenDetect,GRanges-method | Man page |
| mergeCalls | Man page |
| mergeCalls,GRanges-method | Man page |
| nucleR | Man page |
| nucleR-package | Man page |
| nucleosome_htseq | Man page |
| nucleosome_tiling | Man page |
| pcKeepCompDetect | Man page |
| peakDetection | Man page |
| peakDetection,list-method | Man page |
| peakDetection,numeric-method | Man page |
| peakScoring | Man page |
| peakScoring,IRanges-method | Man page |
| peakScoring,IRangesList-method | Man page |
| peakScoring,list-method | Man page |
| peakScoring,numeric-method | Man page |
| plotPatterns | Source code |
| plotPeaks | Man page |
| plotPeaks,GRanges-method | Man page |
| plotPeaks,IRanges-method | Man page |
| plotPeaks,data.frame-method | Man page |
| plotPeaks,numeric-method | Man page |
| processReads | Man page |
| processReads,AlignedRead-method | Man page |
| processReads,CompressedGRangesList-method | Man page |
| processReads,GRanges-method | Man page |
| processTilingArray | Man page |
| readBAM | Man page |
| readBowtie | Man page |
| syntheticNucMap | Man page |
