nucleosome_tiling: Example intensities from Tiling Microarray nucleosome...
In nucleosome-dynamics/nucleR: Nucleosome positioning package for R
Description
Format
Details
Source
Description
Some bases from S.cerevisiae tiling microarray where mononucleosomes were
sequenced and hybridizated with histone-free naked DNA. The intensity is the
normalized ratio between the intensities from nucleosomic and naked DNA.
Format
numeric vector with the intensities.
Details
Due to the difficulty of providing a raw file, this file has been
preprocessed. See details.
The raw .CEL files from Affymetrix S.Cerevisiae Tilling 1.0R Array (3
nucleosomal + 3 naked DNA) has been merged using package Starr and the
resulting ExpressionSet object has been passed to processTilingArray
function from this package as follows:
processTilingArray(data, exprName, chrPAttern="Sc:Oct_2003;chr1", closeGaps=50)
The first 8000bp of the chr1 have been saved as this example dataset.
Source
Publication pending
nucleosome-dynamics/nucleR documentation built on May 6, 2021, 4:47 p.m.
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Description Format Details Source
Description
Some bases from S.cerevisiae tiling microarray where mononucleosomes were sequenced and hybridizated with histone-free naked DNA. The intensity is the normalized ratio between the intensities from nucleosomic and naked DNA.
Format
numeric vector with the intensities.
Details
Due to the difficulty of providing a raw file, this file has been preprocessed. See details.
The raw .CEL files from Affymetrix S.Cerevisiae Tilling 1.0R Array (3
nucleosomal + 3 naked DNA) has been merged using package Starr and the
resulting ExpressionSet object has been passed to processTilingArray
function from this package as follows:
processTilingArray(data, exprName, chrPAttern="Sc:Oct_2003;chr1", closeGaps=50)
The first 8000bp of the chr1 have been saved as this example dataset.
Source
Publication pending
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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