Files in nucleosome-dynamics/nucleR
Nucleosome positioning package for R
.Rprofile
.gitignore
DESCRIPTION
NAMESPACE
R/TODO/nucleoCluster-methods.R
R/TODO/plotCoverOverlap.R
R/controlCorrection.R
R/coverage.rpm.R
R/export.bed.R
R/export.wig.R
R/filterFFT.R
R/fragmentLenDetect.R
R/helpers.R
R/mergeCalls.R
R/nucleR-package.R
R/pcKeepCompDetect.R
R/peakDetection.R
R/peakScoring.R
R/plotPeaks.R
R/processReads.R
R/processTilingArray.R
R/readBAM.R
R/readBowtie.R
R/sample_data.R
R/syntheticNucMap.R
README.md
data/nucleosome_htseq.rda
data/nucleosome_tiling.rda
inst/CITATION
inst/NEWS
inst/extdata/cellCycleM_chrII_5000-25000.bam
man/controlCorrection.Rd
man/coverage.rpm.Rd
man/dot-fftRegion.Rd
man/dot-getThreshold.Rd
man/dot-loadFiles.Rd
man/dot-loadPairedBam.Rd
man/dot-loadSingleBam.Rd
man/dot-mid.Rd
man/dot-processStrand.Rd
man/dot-unlist_as_integer.Rd
man/dot-vectorizedAll.Rd
man/dot-xlapply.Rd
man/export.bed.Rd
man/export.wig.Rd
man/filterFFT.Rd
man/fragmentLenDetect.Rd
man/mergeCalls.Rd
man/nucleR-package.Rd
man/nucleosome_htseq.Rd
man/nucleosome_tiling.Rd
man/pcKeepCompDetect.Rd
man/peakDetection.Rd
man/peakScoring.Rd
man/plotPeaks.Rd
man/processReads.Rd
man/processTilingArray.Rd
man/readBAM.Rd
man/readBowtie.Rd
man/syntheticNucMap.Rd
tests/testthat.R
tests/testthat/test-coverage.rpm.R
vignettes/nucleR.Rmd
vignettes/references.bib
