API for nukappa/dropseq
dropbead
| Global functions | |
|---|---|
| assignCellCyclePhases | Man page |
| classifyCellsAndDoublets | Man page |
| collapseCellsByBarcode | Man page |
| compareGeneExpressionLevels | Man page |
| compareGeneExpressionLevels,MixedSpeciesSample-method | Man page |
| compareSingleCellsAgainstBulk | Man page |
| computeCorrelationSingleCellsVersusBulk | Man page |
| computeGenesPerCell | Man page |
| computeMitochondrialPercentage | Man page |
| computeTranscriptsPerCell | Man page |
| extractDownstreamStatistics | Man page |
| extractReadStatistics | Man page |
| findInflectionPoint | Man page |
| geneExpressionDispersion | Man page |
| geneExpressionMean | Man page |
| geneExpressionSumUMI | Man page |
| keepBestCells | Man page |
| listCellsToCollapse | Man page |
| listCellsToCollapse,MixedSpeciesSample-method | Man page |
| mergeMultipleDGEs | Man page |
| plotCellTypes | Man page |
| plotCumulativeFractionOfReads | Man page |
| plotHeatmapCorrelationMatrixDGE | Man page |
| plotHistogram | Man page |
| plotMitochondrialContent | Man page |
| plotViolin | Man page |
| removeCells | Man page |
| removeLowQualityCells | Man page |
| removeLowQualityGenes | Man page |
| splitDgeByGenesAndCellsOfSpecies | Man page |
| splitDgeByGenesOfSpecies | Man page |
| splitMixedSpeciesSampleToSingleSpecies | Man page |
