extractReadStatistics: Extract statistics from mapped reads.
In nukappa/dropseq: dropbead
Description
Usage
Arguments
Value
Description
Extract statistics from mapped reads, such as total number of reads,
uniquely mapped reaqds, percentages of intronic/intergenic etc. The function
makes use of the R package Rsamtools (part of Bioconductor).
Usage
1
extractReadStatistics(object, yieldSize = 10^6, sample.name = NULL)
Arguments
object
A string describing the exact location of the BAM file for the
sample under consideration.
yieldSize
Large BAM files are processed in batches because of memory
issues. The parameter yieldSize controls the batch size. Default value: 10^6.
sample.name
A string describing the sample.
Value
A data.frame containing the computed statistics.
nukappa/dropseq documentation built on May 24, 2019, 9:57 a.m.
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Description Usage Arguments Value
Description
Extract statistics from mapped reads, such as total number of reads, uniquely mapped reaqds, percentages of intronic/intergenic etc. The function makes use of the R package Rsamtools (part of Bioconductor).
Usage
1 | extractReadStatistics(object, yieldSize = 10^6, sample.name = NULL)
|
Arguments
object |
A string describing the exact location of the BAM file for the sample under consideration. |
yieldSize |
Large BAM files are processed in batches because of memory
issues. The parameter |
sample.name |
A string describing the sample. |
Value
A data.frame containing the computed statistics.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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