plotCumulativeFractionOfReads: Plots the knee plot
In nukappa/dropseq: dropbead
Description
Plots the cumulative fraction of reads against cell barcodes (in descending
number of reads). This way provides a heuristic computation of the number of
STAMPS in the sample (see computational cookbook from Macosko et. al. 2015
for further details and reasoning).
Usage
1
2
plotCumulativeFractionOfReads(object, cutoff = 10000,
draw.infl.point = TRUE)
Arguments
object
A data.frame read from out_readcounts.txt.gz
cutoff
The number of cells to take into account (default is 10000).
draw.infl.point
Whether to annotate the inflation point or not.
nukappa/dropseq documentation built on May 24, 2019, 9:57 a.m.
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Description
Plots the cumulative fraction of reads against cell barcodes (in descending number of reads). This way provides a heuristic computation of the number of STAMPS in the sample (see computational cookbook from Macosko et. al. 2015 for further details and reasoning).
Usage
1 2 | plotCumulativeFractionOfReads(object, cutoff = 10000,
draw.infl.point = TRUE)
|
Arguments
object |
A |
cutoff |
The number of cells to take into account (default is 10000). |
draw.infl.point |
Whether to annotate the inflation point or not. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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