computeCorrelationSingleCellsVersusBulk: Compare single cell sample against bulk data
In nukappa/dropseq: dropbead
Description
Usage
Arguments
Value
Description
Computes correlation of gene expression measurements between a single cell
sample and bulk data.
Usage
1
2
computeCorrelationSingleCellsVersusBulk(single.cells, bulk.data,
method = "pearson")
Arguments
single.cells
The single cell object (could be a DGE or a
SingleSpeciesSample object).
bulk.data
The bulk data formed as a data.frame with genes as
rownames and RPKM values as the first column.
method
The method to compute the correlation (default is Pearson).
Value
A list of length 2. First item is the correlation and second is the
data.frame.
nukappa/dropseq documentation built on May 24, 2019, 9:57 a.m.
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Description Usage Arguments Value
Description
Computes correlation of gene expression measurements between a single cell sample and bulk data.
Usage
1 2 | computeCorrelationSingleCellsVersusBulk(single.cells, bulk.data,
method = "pearson")
|
Arguments
single.cells |
The single cell object (could be a DGE or a
|
bulk.data |
The bulk data formed as a |
method |
The method to compute the correlation (default is Pearson). |
Value
A list of length 2. First item is the correlation and second is the
data.frame.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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