parseCMapID: Parse CMap identifier

In nuno-agostinho/cTRAP: Identification of candidate causal perturbations from differential gene expression data

Parse CMap identifier

Description

Parse CMap identifier

Usage

parseCMapID(id, cellLine = FALSE)

Arguments

id	Character: CMap identifier
cellLine	Boolean: if TRUE, return cell line information from CMap identifier; else, return the CMap identifier without the cell line

Value

Character vector with information from CMap identifiers

See Also

Other functions related with the ranking of CMap perturbations: as.table.referenceComparison(), filterCMapMetadata(), getCMapConditions(), getCMapPerturbationTypes(), loadCMapData(), loadCMapZscores(), plot.perturbationChanges(), plot.referenceComparison(), plotTargetingDrugsVSsimilarPerturbations(), prepareCMapPerturbations(), print.similarPerturbations(), rankSimilarPerturbations()

Examples

id <- c("CVD001_HEPG2_24H:BRD-K94818765-001-01-0:4.8",
        "CVD001_HEPG2_24H:BRD-K96188950-001-04-5:4.3967",
        "CVD001_HUH7_24H:BRD-A14014306-001-01-1:4.1")
parseCMapID(id, cellLine=TRUE)
parseCMapID(id, cellLine=FALSE)

nuno-agostinho/cTRAP documentation built on Jan. 2, 2025, 12:11 a.m.