loadSRAproject: Download and load SRA projects via recount2

In nuno-agostinho/psichomics: Graphical Interface for Alternative Splicing Quantification, Analysis and Visualisation

Download and load SRA projects via recount2

Description

Download and load SRA projects via recount2

Usage

loadSRAproject(project, outdir = getDownloadsFolder())

Arguments

project	Character: SRA project identifiers (check recount_abstract)
outdir	Character: directory to store the downloaded files

Value

List with loaded projects

See Also

Other functions associated with SRA data retrieval: getDownloadsFolder()

Other functions to load data: loadGtexData(), loadLocalFiles(), loadTCGAdata()

Examples

## Not run: 
View(recount::recount_abstract)
sra <- loadSRAproject("SRP053101")
names(sra)
names(sra[[1]])

## End(Not run)

nuno-agostinho/psichomics documentation built on Feb. 11, 2024, 11:16 p.m.