parseVastToolsEvent: Parses an alternative splicing event from VAST-TOOLS

In nuno-agostinho/psichomics: Graphical Interface for Alternative Splicing Quantification, Analysis and Visualisation

Parses an alternative splicing event from VAST-TOOLS

Description

Parses an alternative splicing event from VAST-TOOLS

Usage

parseVastToolsEvent(event)

Arguments

event

Data.frame: VAST-TOOLS event containing gene symbol, event ID, length, junctions coordinates, event type and inclusion levels for both samples

Details

Junctions are parsed from

Value

List with the event attributes (chromosome, strand, event type and the position of the exon boundaries)

Note

Only supports to parse one event at a time.

Examples

event <- read.table(text =
"NFYA HsaEX0042823 chr6:41046768-41046903 136 chr6:41040823,41046768-41046903,41051785 C2 0 N 0 N"
)
psichomics:::parseVastToolsEvent(event)

nuno-agostinho/psichomics documentation built on Feb. 11, 2024, 11:16 p.m.