queryEnsemblByGene: Query information from Ensembl

In nuno-agostinho/psichomics: Graphical Interface for Alternative Splicing Quantification, Analysis and Visualisation

Query information from Ensembl

Description

Query information from Ensembl

Usage

queryEnsemblByGene(gene, species = NULL, assembly = NULL)

queryEnsemblByEvent(event, species = NULL, assembly = NULL, data = NULL)

Arguments

gene	Character: gene
species	Character: species (may be NULL for an Ensembl identifier)
assembly	Character: assembly version (may be NULL for an Ensembl identifier)
event	Character: alternative splicing event
data	Matrix or data frame: alternative splicing information

Value

Information from Ensembl

See Also

Other functions to retrieve external information: ensemblToUniprot(), plotProtein(), plotTranscripts()

Examples

queryEnsemblByGene("BRCA1", "human", "hg19")
queryEnsemblByGene("ENSG00000139618")
event <- "SE_17_-_41251792_41249306_41249261_41246877_BRCA1"
queryEnsemblByEvent(event, species="human", assembly="hg19")

nuno-agostinho/psichomics documentation built on Feb. 11, 2024, 11:16 p.m.