Files in nyoungb2/HTSSIP
High Throughput Sequencing of Stable Isotope Probing Data Analysis

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
HTSSIP.Rproj
LICENSE
NAMESPACE
NEWS.md R/BD_ordinations.R R/BD_shift.R R/DESeq2_l2fc.R R/HRSIP.R R/HTSSIP.R R/HTSSIP_sim.R R/Util.R R/chk.R R/delta_BD.R R/heavy_SIP.R R/phyloseq_subset.R R/pkg_data.R R/qPCR.R R/qSIP_atom_excess.R R/qSIP_trans.R R/stringterpolate.R README.md cran-comments.md
data/physeq_S2D1.rda
data/physeq_S2D1_l.rda
data/physeq_S2D2.rda
data/physeq_S2D2_l.rda
data/physeq_rep3.rda
data/physeq_rep3_qPCR.rda
inst/CITATION
man/BD_shift.Rd man/DESeq2_l2fc.Rd man/HRSIP.Rd man/HTSSIP.Rd man/HTSSIP_sim.Rd man/OTU_qPCR_trans.Rd man/SIP_betaDiv_ord.Rd man/as.Num.Rd man/calc_Gi.Rd man/calc_Mheavymax.Rd man/calc_atom_excess.Rd man/data-physeq_S2D1.Rd man/data-physeq_S2D1_l.Rd man/data-physeq_S2D2.Rd man/data-physeq_S2D2_l.Rd man/data-physeq_rep3.Rd man/data-physeq_rep3_qPCR.Rd man/delta_BD.Rd man/evaluate_matches.Rd man/expr_param_extract.Rd man/extract_expressions.Rd man/extract_formats.Rd man/filter_l2fc.Rd man/format_metadata.Rd man/fraction_overlap.Rd man/get_treatment_params.Rd man/gradient_sim.Rd man/heavy_SIP.Rd man/match_brace.Rd man/match_placeholders.Rd man/max_BD_range.Rd man/overlap_wmean_dist.Rd man/parse_dist.Rd man/perc_overlap.Rd man/phyloseq2df.Rd man/phyloseq2table.Rd man/phyloseq_list_ord_dfs.Rd man/phyloseq_ord_plot.Rd man/phyloseq_subset.Rd man/physeq_format.Rd man/physeq_list_betaDiv.Rd man/physeq_list_ord.Rd man/qPCR_sim.Rd man/qSIP_atom_excess.Rd man/qSIP_atom_excess_format.Rd man/qSIP_bootstrap.Rd man/stringterpolate.Rd man/tss.Rd
manuscript/data/physeq_CR2_l
manuscript/data/physeq_S2D2
manuscript/data/physeq_S2D2C_l
manuscript/data/physeq_S2D2_l
manuscript/data/physeq_S2D3
manuscript/data/physeq_S2D3_l
manuscript/data/physeq_rep3
manuscript/data/physeq_rep3_qPCR
manuscript/figures/BD-ord_BD-shift.pdf
manuscript/figures/BD-ord_BD-shift.png
manuscript/figures/deltaBD_qSIP_Z.pdf
manuscript/figures/deltaBD_qSIP_Z.png
manuscript/figures/sim-data_abund_incorp_shift.pdf
manuscript/figures/sim-data_abund_incorp_shift.png
manuscript/scripts/HTSSIP-sim_data_figs.R manuscript/scripts/HTSSIP-sim_data_figs_v1.R manuscript/scripts/SIPSim_genome10.R manuscript/scripts/fullCyc_data_figs.R manuscript/scripts/fullCyc_dataset.R tests/testthat.R tests/testthat/test-BD_ordinations.R tests/testthat/test-BD_shift.R tests/testthat/test-DESeq2_l2fc.R tests/testthat/test-HRSIP.R tests/testthat/test-HTSSIP_sim.R tests/testthat/test-Util.R tests/testthat/test-chk.R tests/testthat/test-delta_BD.R tests/testthat/test-heavy_SIP.R tests/testthat/test-phyloseq_subset.R tests/testthat/test-qPCR.R tests/testthat/test-qSIP_atom_excess.R tests/testthat/test-qSIP_trans.R tests/testthat/test-stringterpolate.R vignettes/BD_shifts.Rmd vignettes/HTSSIP_intro.Rmd vignettes/HTSSIP_sim.Rmd vignettes/MW_HR_SIP.Rmd vignettes/beta_diversity_ordinations.Rmd vignettes/heavy_SIP.Rmd vignettes/qSIP.Rmd vignettes/quant_incorp.Rmd
nyoungb2/HTSSIP documentation built on April 10, 2018, 9:10 a.m.