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NOTE: This repository is not longer maintained. See The buckleylab fork of HTSSIP for the currently maintained version.

HTSSIP is an R package for analyzing high throughput sequence data from nucleotide stable isotope probing (DNA- & RNA-SIP) experiments.

Available analyzes


All documentation can be found on CRAN.

A good place to start is the HTSSIP introduction vignette.

The manuscript describing HTSSIP is:

Youngblut, Nicholas D., Samuel E. Barnett, and Daniel H. Buckley. 2017. “HTSSIP: An R Package for Analysis of High Throughput Sequencing Data from Nucleic Acid Stable Isotope Probing (SIP) Experiments.” bioRxiv. doi:10.1101/166009.


See References in the HTSSIP introduction vignette.


To get the current released version from CRAN:


To get the current development version from github:

# install.packages("devtools")

nyoungb2/HTSSIP documentation built on April 10, 2018, 9:10 a.m.