parse_dist: Filtering out non-relevant distances in distance matrix
In nyoungb2/HTSSIP: High Throughput Sequencing of Stable Isotope Probing Data Analysis
Description
Usage
Arguments
Value
Examples
Description
Filtering out non-relevant distances in distance matrix
Usage
1
parse_dist(d)
Arguments
d
a distance matrix object
Value
a data.frame object of metadata with fraction BD overlaps
Examples
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## Not run:
data(physeq_S2D2)
physeq_S2D2_d = phyloseq::distance(physeq_S2D2,
method='unifrac',
weighted=TRUE,
fast=TRUE,
normalized=FALSE)
physeq_S2D2_d = parse_dist(physeq_S2D2_d)
head(physeq_S2D2_d)
## End(Not run)
nyoungb2/HTSSIP documentation built on May 24, 2019, 11:51 a.m.
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Description Usage Arguments Value Examples
Description
Filtering out non-relevant distances in distance matrix
Usage
1 | parse_dist(d)
|
Arguments
d |
a distance matrix object |
Value
a data.frame object of metadata with fraction BD overlaps
Examples
1 2 3 4 5 6 7 8 9 10 11 | ## Not run:
data(physeq_S2D2)
physeq_S2D2_d = phyloseq::distance(physeq_S2D2,
method='unifrac',
weighted=TRUE,
fast=TRUE,
normalized=FALSE)
physeq_S2D2_d = parse_dist(physeq_S2D2_d)
head(physeq_S2D2_d)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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