physeq_list_ord: calculating ordinations from a list of distance matrices

In nyoungb2/HTSSIP: High Throughput Sequencing of Stable Isotope Probing Data Analysis

Description

For each dist object in a provided list, the fucntion calculates an ordination with the phyloseq::ordinate function.

Usage

physeq_list_ord(physeq_l, physeq_l_d, ord_method = "NMDS")

Arguments

physeq_l	A list of phyloseq objects
physeq_l_d	A list of dist objects
ord_method	See phyloseq::ordinate

Value

List of ordination objects

Examples

data(physeq_S2D2_l)
## Not run: 
# make a list of beta diversity distance matrix objects
physeq_S2D2_l_d = physeq_list_betaDiv(physeq_S2D2_l)
# make a list of ordinations
physeq_S2D2_l_d_ord = physeq_list_ord(physeq_S2D2_l, physeq_S2D2_l_d)

## End(Not run)

nyoungb2/HTSSIP documentation built on May 24, 2019, 11:51 a.m.