Man pages for oberstal/pfGO
Plasmodium falciparum functional enrichment analysis tools
| bind_rows | bind_rows (imported from dplyr) |
| exampleMydf | _piggyBac_ mutant classification-data from pooled 1k heat... |
| formatGOdb | Creates a GO database compatible with topGO from .gaf file... |
| formatGOdb.curated | Generates new GO database from curated evidence-codes only... |
| get.annot | Extracts and formats annotations from a .gff file. |
| get.GOdef | Get GO terms and definitions |
| get.pfannot | Extracts and formats annotations from a gff file from... |
| get.value | get.value |
| ldply | ldply (imported from plyr) |
| makeDirs | Creating directory-structure |
| Pfal_geneID2GO | All GO terms mapped to _P. falciparum_ genes |
| Pfal_geneID2GO_curated | All curated GO terms mapped to _P. falciparum_ genes |
| pf.annot | All _P. falciparum_ gene-product annotations. |
| pf.genesets.mpmp | Curated _P. falciparum_ gene-sets. |
| pfGO-package | pfGO: Plasmodium falciparum functional enrichment analysis... |
| pf.insertions | _piggyBac_ insertions reported in Zhang et al. 2018 (Science) |
| pipe | pipe operator (from magrittr) |
| run.topGO.meta | Run JO's topGO pipeline |
| topGO | topGO |
| unlist2 | unlist2 (imported from AnnotationDbi) |
