exampleMydf: _piggyBac_ mutant classification-data from pooled 1k heat...
In oberstal/pfGO: Plasmodium falciparum functional enrichment analysis tools
exampleMydf R Documentation
piggyBac mutant classification-data from pooled 1k heat shock screen
Description
A data frame with P. falciparum geneIDs in column 1, and interest-category classifications in column 2. In pooled piggyBac-mutant screening, common interest-category classifications may be some form of "sensitive", "tolerant", and "neutral".
All mutants detected above threshold in the pooled 1k-library heat shock screen are included in this table (n = 752). Derived from /urlhttps://www.nature.com/articles/s41467-021-24814-1, Table S2.
can be used as example mydf input for run.topGO.meta.
Usage
data(exampleMydf)
Format
A 2-column data frame with 752 P. falciparum geneIDs in column 1, and interest-category classifications (here, phenotypes in pooled screening) in column 2.
Source
https://www.nature.com/articles/s41467-021-24814-1
Examples
run.topGO.meta(mydf = exampleMydf, geneID2GO = Pfal_geneID2GO)
oberstal/pfGO documentation built on April 22, 2024, 7:15 a.m.
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| exampleMydf | R Documentation |
piggyBac mutant classification-data from pooled 1k heat shock screen
Description
A data frame with P. falciparum geneIDs in column 1, and interest-category classifications in column 2. In pooled piggyBac-mutant screening, common interest-category classifications may be some form of "sensitive", "tolerant", and "neutral".
All mutants detected above threshold in the pooled 1k-library heat shock screen are included in this table (n = 752). Derived from /urlhttps://www.nature.com/articles/s41467-021-24814-1, Table S2.
can be used as example mydf input for run.topGO.meta.
Usage
data(exampleMydf)
Format
A 2-column data frame with 752 P. falciparum geneIDs in column 1, and interest-category classifications (here, phenotypes in pooled screening) in column 2.
Source
https://www.nature.com/articles/s41467-021-24814-1
Examples
run.topGO.meta(mydf = exampleMydf, geneID2GO = Pfal_geneID2GO)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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