pfGO-package: pfGO: Plasmodium falciparum functional enrichment analysis...
In oberstal/pfGO: Plasmodium falciparum functional enrichment analysis tools
pfGO-package R Documentation
pfGO: Plasmodium falciparum functional enrichment analysis tools
Description
Handy functions and datasets specifically enabling Plasmodium falciparum functional enrichment analyses. You provide a single list of all genes included with your experiment and how you categorized them (e.g. upregulated, downregulated,neutral); then pfGO will test each category for functional enrichment. pfGO acts as a wrapper around the topGO package for much of its enrichment functionality, while also providing several functions for incorporating latest gene-ontology and functional annotations directly from PlasmoDB.org. pfGO enables chaining together many parallel enrichment-analyses at once, generating thorough logs and outputs supporting reproducible analyses.
Details
See the documentation for the run.topGO.meta() function for examples and common use-cases. See the "index" link at the bottom of this window for all included datasets and functions.
Author(s)
Maintainer: J Oberstaller jobersta@usf.edu (ORCID)
See Also
run.topGO.meta()
oberstal/pfGO documentation built on April 22, 2024, 7:15 a.m.
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| pfGO-package | R Documentation |
pfGO: Plasmodium falciparum functional enrichment analysis tools
Description
Handy functions and datasets specifically enabling Plasmodium falciparum functional enrichment analyses. You provide a single list of all genes included with your experiment and how you categorized them (e.g. upregulated, downregulated,neutral); then pfGO will test each category for functional enrichment. pfGO acts as a wrapper around the topGO package for much of its enrichment functionality, while also providing several functions for incorporating latest gene-ontology and functional annotations directly from PlasmoDB.org. pfGO enables chaining together many parallel enrichment-analyses at once, generating thorough logs and outputs supporting reproducible analyses.
Details
See the documentation for the run.topGO.meta() function for examples and common use-cases. See the "index" link at the bottom of this window for all included datasets and functions.
Author(s)
Maintainer: J Oberstaller jobersta@usf.edu (ORCID)
See Also
run.topGO.meta()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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