compute_CCpair_score: compute_CCpair_score

In olapuentesantana/easier_manuscript: Evaluate patient immune response to ICBs through a systems approach

Description

compute_CCpair_score computes the score for each cell - cell pair for all the patients.

Usage

compute_CCpair_score(
  celltype1,
  celltype2,
  intercell_network,
  lrpairs_binary,
  lr_frequency,
  compute_log = TRUE
)

Arguments

celltype1	string character with first cell type involved in the interaction
celltype2	string character with second cell type involved in the interaction
intracell.network	matrix with data on cell types interaction network
lrpairs.binary	binary vector displaying LR pairs with non-zero frequency
lr.frequency	numeric vector with LR pairs frequency across the whole TCGA database
compute.log	boolean variable in order to take the log of the weighted score
cancertype	string character

Value

numeric vector with weighted scores

olapuentesantana/easier_manuscript documentation built on Sept. 22, 2021, 9:42 p.m.