compute_CC_pairs_grouped: compute_CC_pairs_grouped
In olapuentesantana/easier_manuscript: Evaluate patient immune response to ICBs through a systems approach
Description
Usage
Arguments
Value
View source: R/compute_CC_pairs_grouped.R
Description
compute_CC_pairs_grouped computes CC pairs (considering cell groups instead of individual cell types) from tpm,
using the null model for CC interaction computed on TCGA data.
Usage
1
compute_CC_pairs_grouped(lrpairs, cancertype)
Arguments
lrpairs
Ligand-leceptor pairs weights matrix
cancertype
string character
Value
A list with the following elements:
- score
cell-cell interaction scores matrix with rows=samples and columns=cells
- pval
corresponding p-values for each cell-cell pair, comparing the score with
the null hypothesis
olapuentesantana/easier_manuscript documentation built on Sept. 22, 2021, 9:42 p.m.
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Description Usage Arguments Value
View source: R/compute_CC_pairs_grouped.R
Description
compute_CC_pairs_grouped computes CC pairs (considering cell groups instead of individual cell types) from tpm,
using the null model for CC interaction computed on TCGA data.
Usage
1 | compute_CC_pairs_grouped(lrpairs, cancertype)
|
Arguments
lrpairs |
Ligand-leceptor pairs weights matrix |
cancertype |
string character |
Value
A list with the following elements:
- score
cell-cell interaction scores matrix with rows=samples and columns=cells
- pval
corresponding p-values for each cell-cell pair, comparing the score with the null hypothesis
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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